Running pycoQC on BAM files (pycoQC)
Run pycoQC on the BAM file ~/nanomod_course_data/yeast/subset_2.sorted.bam
and the corresponding sequencing summary file
~/nanomod_course_data/yeast/sequencing_summary.subset_2.txt.
Do you see anything unusual about the coverage overview and the read length distribution?
# command syntax below.
# please fill files suitably
pycoQC -f $input_seq_sum -a $input_bam -o $output_html \
-j $output_json --quiet