| Topic | Title | Output |
|---|---|---|
| BAM files | Exploring an unknown BAM file | [txt] |
| Modification analysis | Compare modification levels | [txt] |
| Modification analysis | Are only CpG sites methylated? | [txt] |
| igv | Visualizing mod BAM files in IGV | [txt] |
| Modification analysis | Most modified read | [txt] |
| Modification analysis | Most modified region | [txt] |
| pycoQC | Running pycoQC on BAM files | [txt] |